Publication-quality graphics can be generated in the Molecular Operating Environment (MOE), which also offers a collection of innovative ways to analyse and display molecular level systems. Supports membrane patches and vesicles, microdomains as well as stacking of monolayer and/or bilayer membranes. Interactively generate heterogeneous PDB-based membranes with varying lipid compositions and semi-automatic protein placement. Marvin is a collection of tools for drawing, displaying and characterizing chemical structures, queries, macromolecules and reactions for all operating systems, web pages and custom applications. A Java version does 3-D Web display without plug-ins. Free, open source for Windows and Mac (OSX or PPC), Unix, and Linux. Interactive molecular display for research and educational uses. It is cross-platform, running on Windows, Mac OS X, and Linux/Unix systems. Jmol is a free, open source molecule viewer for students, educators, and researchers in chemistry and biochemistry. The app has a direct link to the Protein Data Bank (PDB) and DrugBank and has a fast and easy to use interface. 10.2Īn app for the iPhone/iPad and Android that lets you browse protein, DNA, and drug molecules in 3D. Open GL graphics program displays small, large, and multiple molecules measures distances and angles, superimposes structures, calculates RMSD between atom coordinates, structurally aligns chains, and displays dynamics trajectories. IcmJS brings desktop quality graphics to web applications. Software (free download) for browsing molecules and making fully-interactive 3D molecule documents for embedding in PowerPoint and the Web using ActiveICM.įree JavaScript/HTML5 3D molecular viewer which does not require any plug-in or browser extension and runs inside any modern browser. The final visualisation model can be downloaded for publication or saved for subsequent use.įoldit is a crowdsourcing computer game based on protein modeling. Simultaneously displays structure, sequence, and alignment, with annotation and alignment editing features, for use with 3-D structures from NCBI's Entrez available for Windows, Macintosh, and UnixĪ program for building, displaying and manipulating all kinds of crystal and molecular structures.Įmbedded Python Molecular Viewer (ePMV) is an open-source plug-in that runs molecular modeling software directly inside of professional 3D animation applicationsĪ simple-to-use web-based molecular visualisation tool particularly designed for the occasional user which works with most common browsers so there is no need for any installation or a licence. Next-generation interactive molecular modeling system for analysis and presentation graphics of molecular structures and related data, including density maps, sequence alignments, trajectories, and docking results advantages include ambient-occlusion lighting, high performance on large data, Toolshed plugin repository, virtual reality interface free for noncommercial use, available for Windows, Linux, and Mac OS X. Interactive molecular modeling system for analysis and presentation graphics of molecular structures and related data, including densitymaps, sequence alignments, trajectories, and docking results free for noncommercial use, available for Windows, Linux, and Mac OS X. The program runs 'out of the box' on Linux, MacOSX and Windows platforms. Users can superpose and analyse structures as well. Final renders are done automatically in the cloud with Blender and no graphics experience is needed.Ĭreate beautiful publication quality images and movies. It includes professionally designed backgrounds and cinematic camera moves. It's simple and quick new users can create a video from scratch in twenty minutes. Open Source viewer that includes features for morphing proteins and visualization of lipophilic and electrostatic potentials.īioViz Studio from Dark Star Systems is a web-based tool to help scientists create beautiful short videos of proteins and other molecules. Diversity, Equity, Inclusion, and AccessĪccess additional resources of interest, submitted by community members.Citation, Usage, Privacy Policies, Logo.Biologically Interesting Molecule Reference Dictionary (BIRD).
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